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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29917751_29918637_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
29917751 - 29918637
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGGAAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTTGGTATCT
Flanking Amino Acid:
LETNKVTQENVENLLAAACS
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
55.8
0.13
1.1
51
42
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
43.7
-0.3
2.7
71.72
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008093
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008408
29911170 - 29931677
20508