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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29922546_29923007_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29922546 - 29923007
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CATTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AGTTCTTTCATT
Flanking Amino Acid:
KSAHRTLLRSNSSEVTPPVL
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.2
0.61
0.9
69.7
36.3
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
63.3
0.5
1.7
78.72
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008093
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008408
29911170 - 29931677
20508