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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29923354_29924876_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29923354 - 29924876
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTCTAATA
Flanking Amino Acid:
RNTNMETSNQHEDAVPKDEA
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
68.4
36.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.9
0.76
0.8
82
28.5
Minor 5ss
35.6
-1.6
3.5
47.4
48.2
Minor BPS
66.6
0.52
1.6
79.19
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008093
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008408
29911170 - 29931677
20508