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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2996667_2997116_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2996667 - 2997116
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ACTTCTTAAAAC
Flanking Amino Acid:
TENGIIFGNIVYDVSGAASD
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
87.2
0.84
0.8
82
33.9
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
56.1
0.17
1.8
65.5
40.4

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835