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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29975115_29978822_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29975115 - 29978822
Intron Length:
3708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTTCAGGACT
Flanking Amino Acid:
RRRSTAGAAQGTQCEIAAKA
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.9
0.87
0.6
85.2
22.1
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
54.1
0.21
1.8
77.61
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008185
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028004
29975021 - 29986823
11803