Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29986744_29987960_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29986744 - 29987960

Intron Length:

1217

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTCTTGAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTTAT

U12 Branch Point Sequence:

ATTTCGTTATTT

Flanking Amino Acid:

TVIKGLANIGAAFQSMMSGG

Intron Amino Acid Position:

327

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

74.8

0.62

0.9

63.7

35.1

Major PPT

75.6

0.58

76.3

31.9

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

57.9

0.33

2.3

82.08

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008185

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008523

29976079 - 29988025

11947