Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29987_30552_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29987 - 30552

Intron Length:

566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACAGCGG

5'SS Class:

major

3'SS Sequence:

CTTTCCCCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

GTCTTCTGATGT

Flanking Amino Acid:

LAAAWYSGVNRPRNIMVYNC

Intron Amino Acid Position:

351

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.1

48.7

47.2

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

82.9

0.74

0.7

31.1

Minor 5ss

28.4

-2.5

3.5

38.7

46.4

Minor BPS

46.7

-0.1

64.8

45.6

Associated Gene:

Gene:

FAR1

Ensembl Gene ID:

ENSAPLG00000005107

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005315

16966 - 51974

35009

ENSAPLT00000037805

6668 - 51974

45307