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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2998876_2999456_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2998876 - 2999456
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAG
U12 Branch Point Sequence:
AATACCTTAACT
Flanking Amino Acid:
ADPLASKLNKVTQLTGFSDP
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73
34.2
Major BPS
60.7
0.27
1.6
59.7
46.7
Major PPT
86.4
0.82
0.8
80.9
31
Minor 5ss
43.2
-0.7
2.9
55.8
48.3
Minor BPS
81.7
1.07
1.1
89.09
34.5

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835