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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29996276_29997222_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29996276 - 29997222
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTTTCCTCTACT
Flanking Amino Acid:
SLTYVVGILQMLFFNIPLMA
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
89.4
0.89
0.6
87.7
22.4
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
72.2
0.78
1.8
93.02
35.2

Associated Gene:

Gene:
TMEM62
Ensembl Gene ID:
ENSAPLG00000008795
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009157
29995949 - 30014602
18654