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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2999637_2999793_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2999637 - 2999793
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATTGTGAAAT
Flanking Amino Acid:
KLEEEKLSQKKESEKRNVTV
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
88.8
0.87
0.7
84.2
30.7
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
47.1
-0.1
2.2
68.17
42

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835