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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29997342_29998186_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29997342 - 29998186
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTCTGATGT
Flanking Amino Acid:
ILLLNLYTILGPWFVGELVD
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89.4
0.89
0.6
87.9
22.1
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
50.2
0.09
2
74.74
42.1

Associated Gene:

Gene:
TMEM62
Ensembl Gene ID:
ENSAPLG00000008795
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009157
29995949 - 30014602
18654