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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29998292_29999836_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29998292 - 29999836
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAAAT
Flanking Amino Acid:
FRYLQKPALRGKPGLLSLTS
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.7
0.47
0.9
69.2
37
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
73
0.8
1.5
90.14
33.1

Associated Gene:

Gene:
TMEM62
Ensembl Gene ID:
ENSAPLG00000008795
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009157
29995949 - 30014602
18654