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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29999922_30000878_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29999922 - 30000878
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
GAGTTAAAAACT
Flanking Amino Acid:
VILLTDHYVLARVLFGLIVL
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
86.4
28.9
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
86.6
0.82
0.8
84.6
30.3
Minor 5ss
43.5
-0.7
2.9
62.1
37.1
Minor BPS
43
-0.4
2
59.8
43.1

Associated Gene:

Gene:
TMEM62
Ensembl Gene ID:
ENSAPLG00000008795
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009157
29995949 - 30014602
18654