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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3000022_3000411_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3000022 - 3000411
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTCCATTCTATT
Flanking Amino Acid:
SLVQEKKKQNSFIAEAMLLM
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
80
34.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
85.7
0.8
0.7
84.2
23.7
Minor 5ss
38.3
-1.3
3.1
54.8
42.5
Minor BPS
43.7
-0.4
1.9
62.39
41.7

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835