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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30002903_30004367_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30002903 - 30004367
Intron Length:
1465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTGT
5'SS Class:
weak_major
3'SS Sequence:
GTTCAATCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTCAATC
Flanking Amino Acid:
LVKILHSTHIRVLAFSPAVI
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.3
60.8
46.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
66.6
0.37
0.9
63.2
38.2
Minor 5ss
50.3
0.01
2.9
74.2
42.1
Minor BPS
52.3
0.05
1.9
66.99
39.2

Associated Gene:

Gene:
TMEM62
Ensembl Gene ID:
ENSAPLG00000008795
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009157
29995949 - 30014602
18654