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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3000533_3001203_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3000533 - 3001203
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAG
5'SS Class:
major
3'SS Sequence:
GCTGTATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGATAACT
Flanking Amino Acid:
SSRPAKKEEDRPPLRGFLLD
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
38.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.6
0.6
0.9
69.4
40.7
Minor 5ss
41.2
-1
2.5
50.7
45.8
Minor BPS
52.7
0.16
2.3
82.09
39.1

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835