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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30005702_30005833_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30005702 - 30005833
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTATTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
SPAPGIRTLMSSATAYLCGH
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.1
0.77
0.8
85.9
26.9
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
TMEM62
Ensembl Gene ID:
ENSAPLG00000008795
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009157
29995949 - 30014602
18654