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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30005959_30008043_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30005959 - 30008043
Intron Length:
2085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTCAG
5'SS Class:
major
3'SS Sequence:
CTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTTCCAAACA
Flanking Amino Acid:
PYNFFGILNMSQMQELSMMA
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
56.1
42.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
39.9
-1.1
2.8
46.4
44.2
Minor BPS
60.6
0.33
2
79.54
36.7

Associated Gene:

Gene:
TMEM62
Ensembl Gene ID:
ENSAPLG00000008795
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009157
29995949 - 30014602
18654