About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30010525_30011577_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30010525 - 30011577
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCCCTTACAG
Flanking Amino Acid:
TKWIDIKGNHDSFNIPHLDS
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.4
0.73
0.7
75.9
26.3
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
55.1
0.02
1.9
62.06
45.4

Associated Gene:

Gene:
TMEM62
Ensembl Gene ID:
ENSAPLG00000008795
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009157
29995949 - 30014602
18654