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Intron Name: Anas_platyrhynchos_platyrhynchos_5_3001365_3001594_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3001365 - 3001594

Intron Length:

230

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TATTTGTGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATATAT

U12 Branch Point Sequence:

TATATCTCAACA

Flanking Amino Acid:

MTEVRRSLGEIPIVESEIKK

Intron Amino Acid Position:

486

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

76.6

Major BPS

71.4

0.53

67.3

39.3

Major PPT

74.9

0.56

73.8

41.4

Minor 5ss

44.5

-0.6

2.7

57.3

47.4

Minor BPS

64.3

0.45

1.6

73.69

37.5

Associated Gene:

Gene:

COPB1

Ensembl Gene ID:

ENSAPLG00000007005

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007348

2992765 - 3011599

18835