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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3001692_3002659_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3001692 - 3002659
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CATGACTAAATT
Flanking Amino Acid:
LEVFHAIKSVKIYRGALWIL
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
71.2
34.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.5
0.55
0.9
73
37.3
Minor 5ss
30.8
-2.2
2.9
35.8
34.5
Minor BPS
48.4
-0
1.9
65.54
45.3

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835