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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3002806_3003230_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3002806 - 3003230
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGGAAA
5'SS Class:
major
3'SS Sequence:
TCTGTTGTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TCATATTTACTC
Flanking Amino Acid:
PDMAANVIPVLMEFLSDNNE
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
69.3
36.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
67
0.38
1.1
61.5
44.5
Minor 5ss
37.8
-1.4
3.1
44.4
45.6
Minor BPS
49.5
-0
1.8
59.44
40.3

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835