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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30030831_30032973_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30030831 - 30032973
Intron Length:
2143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATAACT
Flanking Amino Acid:
NSIHKNHRYKMHSSTGGGFC
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.6
0.64
0.9
72
38
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
74.4
0.84
1.5
90.12
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009428
30025563 - 30057032
31470