About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30035200_30035660_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30035200 - 30035660
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
GACTTTTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
GTATGATGAAAT
Flanking Amino Acid:
EKELPPELTISREKVDSYYC
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
76.8
0.6
0.9
68.7
41.7
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
45
-0.3
2.1
65.72
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009428
30025563 - 30057032
31470