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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30037496_30037798_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30037496 - 30037798
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
ACCTGATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAATTCTTACCT
Flanking Amino Acid:
SCQEAKEEIKRHSENVSQRP
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
63.7
0.31
0.9
54.4
39.9
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
68.6
0.66
1.6
81.69
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009428
30025563 - 30057032
31470