Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30040967_30041609_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30040967 - 30041609

Intron Length:

643

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGTGCA

5'SS Class:

major

3'SS Sequence:

TTAATTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AATATTTTAATT

Flanking Amino Acid:

SVQMFTVPTLARHLIEEQSV

Intron Amino Acid Position:

417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

69.5

34.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.74

0.9

77.5

36.4

Minor 5ss

39.2

-1.2

46.9

43.8

Minor BPS

66.6

0.6

1.2

75.73

34.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008919

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009428

30025563 - 30057032

31470