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Intron Name: Anas_platyrhynchos_platyrhynchos_5_3004109_3005156_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3004109 - 3005156

Intron Length:

1048

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATAATTT

5'SS Class:

major

3'SS Sequence:

CTTTTAATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATCCTTTTAATT

Flanking Amino Acid:

TLSSAPTAIKAAAQCYIDLI

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

76.6

32.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.8

0.69

0.8

78.9

33.2

Minor 5ss

49.3

-0

2.9

73.4

43.4

Minor BPS

0.58

1.2

74.8

36.5

Associated Gene:

Gene:

COPB1

Ensembl Gene ID:

ENSAPLG00000007005

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007348

2992765 - 3011599

18835