Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30042981_30043787_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30042981 - 30043787

Intron Length:

807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGCAAA

5'SS Class:

major

3'SS Sequence:

TTTTAAATTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTAATATAACT

Flanking Amino Acid:

LMFQEWCACDEELLLRAYKE

Intron Amino Acid Position:

546

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

76.2

34.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.6

0.6

0.9

68.1

42.1

Minor 5ss

41.1

-1

2.9

53.2

Minor BPS

59.3

0.37

1.8

82.99

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008919

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009428

30025563 - 30057032

31470