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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30043972_30044920_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30043972 - 30044920
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCCTATTT
Flanking Amino Acid:
IHLPLSRTLAGLHVRLSKTG
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.5
0.73
0.8
77.7
36
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
60.1
0.4
1.9
84.08
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009428
30025563 - 30057032
31470