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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30048091_30049074_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30048091 - 30049074
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
AATTTTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AATTTTTTACCA
Flanking Amino Acid:
SAITKSLPENENNETGLENV
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.5
37
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
77.7
0.62
1
71.1
43.3
Minor 5ss
33.8
-1.8
3
47.3
41.1
Minor BPS
62
0.37
1.5
70.12
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009428
30025563 - 30057032
31470