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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3005295_3005638_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3005295 - 3005638
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTTCTTTGAAT
Flanking Amino Acid:
QLVIVELIYKVCHANPSERA
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.5
36.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71
0.47
1
63.4
42
Minor 5ss
29.1
-2.4
3.4
38.8
46.3
Minor BPS
72.1
0.78
1.3
85.07
34.9

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835