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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30054119_30055273_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30054119 - 30055273
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCACCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ACCTTTTTAACA
Flanking Amino Acid:
QKDMINWILQMFDTVKRMRE
Intron Amino Acid Position:
967

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.4
41.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
67
0.38
0.8
58.8
31.5
Minor 5ss
47.2
-0.3
2.6
66.5
44.6
Minor BPS
68.7
0.58
1.2
68.42
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008919
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009428
30025563 - 30057032
31470