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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3005732_3006335_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3005732 - 3006335
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTCTTTTATT
Flanking Amino Acid:
AFMMLIHADQDRALDYLSTC
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.2
0.7
0.9
81.3
36.3
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
71
0.74
1.5
85.88
34

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835