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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3006451_3007159_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3006451 - 3007159
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTTTTCAAAG
Flanking Amino Acid:
NAVLAIYTIYRNFEHLIPDA
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
76
34.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
76.4
0.59
1
78.1
34.2
Minor 5ss
33.3
-1.9
3.2
44.6
43.4
Minor BPS
59.2
0.15
1.7
68.37
39.3

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835