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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30066641_30067323_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30066641 - 30067323
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTAATTAATA
Flanking Amino Acid:
IQKHLIRLLGVLLPNFKMED
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.7
0.74
0.8
78
35.5
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
56.9
0.21
1.8
68.15
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024517
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028458
30066565 - 30076758
10194