Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30069488_30070645_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30069488 - 30070645

Intron Length:

1158

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

AACATTTTAACA

Flanking Amino Acid:

GVSPPEELQQVSEEGQFKAL

Intron Amino Acid Position:

143

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

84.2

33.9

Major BPS

89.7

0.98

0.7

89.9

Major PPT

93.2

0.97

0.6

88.8

20.4

Minor 5ss

38.7

-1.3

2.9

50.6

45.9

Minor BPS

61.2

0.35

1.3

63.01

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024517

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028458

30066565 - 30076758

10194

ENSAPLT00000022924

30065694 - 30076758

11065