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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3007330_3007946_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3007330 - 3007946
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCCTGT
5'SS Class:
weak_major
3'SS Sequence:
TTGTTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGCTTGTTGATT
Flanking Amino Acid:
MILVCDAYRKDLQHPNEFIR
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.2
56.7
45
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.7
0.6
0.9
74.7
40
Minor 5ss
44.3
-0.6
3.2
64.5
46.9
Minor BPS
50.5
0.1
2.1
70.59
41.2

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835