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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30073888_30076037_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30073888 - 30076037
Intron Length:
2150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAT
Flanking Amino Acid:
QCGAGVCMFLKIRECKVVLI
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.7
0.6
1
80.8
31
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
70.8
0.73
1.3
85.51
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024517
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028458
30066565 - 30076758
10194