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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3008177_3008829_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3008177 - 3008829
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTTCTTGAATT
Flanking Amino Acid:
PSEISLKNDLEKGDVKLKTE
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
90.9
28.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.4
0.55
0.8
66.3
35.8
Minor 5ss
27.1
-2.6
3.8
41.5
45.1
Minor BPS
71.9
0.76
1.4
84.4
36.8

Associated Gene:

Gene:
COPB1
Ensembl Gene ID:
ENSAPLG00000007005
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007348
2992765 - 3011599
18835