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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3012141_3012989_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3012141 - 3012989
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGCT
5'SS Class:
major
3'SS Sequence:
CTTTGCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTTGCTTAACA
Flanking Amino Acid:
LPAEQDLTTKNVSIGIVGKD
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73.9
34.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
77.9
0.63
0.9
73.2
36
Minor 5ss
40.8
-1
3.2
59
45.7
Minor BPS
74.6
0.77
1.8
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007846
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008194
3011620 - 3019593
7974