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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30121906_30124803_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30121906 - 30124803
Intron Length:
2898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAGTTCCT
5'SS Class:
weak_major
3'SS Sequence:
CAATGTAGTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTTTCAATG
Flanking Amino Acid:
LFLLGNQAEFSKIGGGGFGE
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.4
51.8
44.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
51.3
0.03
1.2
53.5
44.6
Minor 5ss
37.1
-1.5
3.2
51.4
39.5
Minor BPS
60
0.18
1.5
65.22
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029038
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024696
30121871 - 30125092
3222