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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30124975_30125082_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30124975 - 30125082
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCATGT
5'SS Class:
major
3'SS Sequence:
AATGGTTGTTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTGATAAAT
Flanking Amino Acid:
QGRTIPWIWRRME*
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
63.4
43.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
55
0.11
1.2
56.9
47
Minor 5ss
43.8
-0.7
3.3
65.2
46
Minor BPS
50.9
0.11
2.3
81.82
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029038
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024696
30121871 - 30125092
3222