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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3013822_3014284_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3013822 - 3014284
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATTTGTTTAATG
Flanking Amino Acid:
GVGLLIAGYDDMGPHIFQTC
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
86.3
0.82
0.6
85.3
22.1
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
63.4
0.28
1.8
69.15
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007846
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008194
3011620 - 3019593
7974