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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30157633_30158177_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30157633 - 30158177
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGAGA
5'SS Class:
major
3'SS Sequence:
TTATTTTCTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCATTCGTAACT
Flanking Amino Acid:
KPDTDKFLETCLEKMQKGLN
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.7
40.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.6
0.64
1
83.8
31.3
Minor 5ss
31.1
-2.2
3.2
36.7
42.5
Minor BPS
62.3
0.46
2
80
42.2

Associated Gene:

Gene:
TTBK2
Ensembl Gene ID:
ENSAPLG00000010860
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011311
30157463 - 30176743
19281