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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30158782_30163435_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30158782 - 30163435
Intron Length:
4654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTCCTCACCA
Flanking Amino Acid:
EAQAEGALTPLSSSHMLHFS
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
33.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.7
0.65
0.9
72.5
37.8
Minor 5ss
30.2
-2.3
3.3
39
46.2
Minor BPS
69.1
0.6
1.8
83.78
36.8

Associated Gene:

Gene:
TTBK2
Ensembl Gene ID:
ENSAPLG00000010860
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011311
30157463 - 30176743
19281