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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30163685_30174019_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30163685 - 30174019
Intron Length:
10335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCAATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCTTCTCTAATT
Flanking Amino Acid:
IRISKAQLQQVTIPRPSVAS
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
76.4
34.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.2
0.68
0.9
75.2
33.4
Minor 5ss
29
-2.4
2.7
32.5
42.4
Minor BPS
61.8
0.45
1.7
75.83
41.7

Associated Gene:

Gene:
TTBK2
Ensembl Gene ID:
ENSAPLG00000010860
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011311
30157463 - 30176743
19281