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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3016636_3019329_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3016636 - 3019329
Intron Length:
2694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTACCTTTGATT
Flanking Amino Acid:
DNDVTVWSPQGRIHQIEYAM
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.8
0.92
0.7
89.2
27.2
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
69.8
0.71
1.1
81.1
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007846
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008194
3011620 - 3019593
7974