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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30193504_30194132_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30193504 - 30194132
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCACTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTGGTGATTT
Flanking Amino Acid:
PPMGAASGWTNKSKPSRRIN
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
31.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
82.5
0.73
0.8
79.9
32
Minor 5ss
32.4
-2
3.3
40
39.8
Minor BPS
43.7
-0.4
2.6
72.32
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085