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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3019375_3019590_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3019375 - 3019590
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGAGGC
5'SS Class:
major
3'SS Sequence:
TTTGTGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTGTGCTGATGG
Flanking Amino Acid:
MFRNQYDNDVT
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1
53
38.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
76
0.58
0.9
69.9
36.6
Minor 5ss
24.1
-3
3.4
29
38.6
Minor BPS
39.2
-0.9
2.3
43.36
48

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007846
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008194
3011620 - 3019593
7974