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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30194358_30195508_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30194358 - 30195508
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTGTCT
5'SS Class:
major
3'SS Sequence:
TCTTGAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TGTTCTTGAATT
Flanking Amino Acid:
QEEREMLKKERCKLLHQASS
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
57.4
42.2
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
78.5
0.64
0.9
74.6
39
Minor 5ss
38.9
-1.3
3.5
57
47.2
Minor BPS
73
0.8
1.3
85.63
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085